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antismash

antiSMASH

bitcoin

Bitcoin Core integration/staging tree

data_incubator

a simple web app to display some figures I created

dielectric-continuum-theory

solves integral equations from dielectric continuum theory

dihedral_analysis

dpd_membrane_simulation

module for simulating flow through porous media with dissipative particle dynamics

esm_protein_physics

Use protein language model ESM to train models of protein physics

fcs_analysis

analysis of flow cytometry data

fcsparser

a python parser for reading fcs files supprorting fcs 2.0, 3.0, 3.1

flask_practice

learning how to use flask for simple web programming with python

github_api_analysis

analysis of data from github api

hard_spheres

Sample from hard sphere configurations using score based generative models

haskell

learning haskell

haskell-1

Haskell bindings for TensorFlow

ising_model_app

javascript ising model simulation

lj_app

a javascript simulation of a 2d lennard jones model

machine-learning-for-physics

A collection of papers, tools, blog posts and tweets about machine learning and physics

mc_dihedrals

membrane_simulations

simulations of fluid flow through porous membranes

mitochondrial_dna_analysis

myflasktutorial

A Flask Tutorial for people who don't know any web programming. Actually, it would be helpful to know static HTML, also Python.

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

openmm-plumed

OpenMM plugin to interface with PLUMED

openmoltools

An open set of tools for automating tasks relating to small molecules

particle_simulations

pymummer

Python3 module for running MUMmer and reading the output

python-fes-scripts

rewotes

REal WOrld TEstS: a set of quick take-home assignments used to test one's fit for a position with the company.

shafferpr.github.io

solar_radiation_database

analysis of data from the national solar radiation database