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This repo contains code for assignments from my Programming for Biologists course. Following topics are covered:

-Python Intro: Primitives, Functions, Operators, Flow control

-Python Data Structures: Collections and Dictionaries

-Writing Python Functions, Modules, and I/O

-Python Utilities, Working with text, Regular Expressions

-Introductory data analysis with numpy/scipy; Experimental analysis in Differential Gene Expression and Clustering

-BioPython and Advanced Python constructs:UDTs

-Introduction to Unix command-line / Command Line execution of scripts

-Introductory sequence analysis: Pairwise Sequence Alignment, Sequence Database Searches (BLAST)

-High Performance Computing (HPC)

-Advanced data analysis: Predictive and probabilistic models in Gene

prediction/HMM/machine learning

-Scientific programming: Workflows & Git

-Data visualization with Python and R

-Machine learning in Python