Comments (3)
I'm having the similar issue so I was wondering if anyone has an answer to this?
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Is it possible that Recycler is just taking a very long time? How big are the input files?
Our recommendation is to use our new tool, SCAPP which is supposed to replace Recycler for assembling plasmids in metagenomic samples. SCAPP: https://github.com/Shamir-Lab/SCAPP
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it's 28,9 MB (28 890 693 bytes), so the usual size for a contig file I would say
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Related Issues (20)
- make_fasta_from_fastg.py: error: argument -b/--bam is required HOT 1
- test HOT 1
- make_fasta_from_fastg.py :: incorrect help message HOT 1
- RuntimeError: dictionary changed size during iteration HOT 2
- ImportError: No module named recyclelib.utils HOT 1
- RuntimeWarning: invalid value encountered in sqrt HOT 5
- ZeroDivisionError: float division by zero HOT 2
- Support for assembly graphs in .gfa format HOT 3
- Recycler with Bowtie2 and MEGAHIT HOT 1
- Length of circular contigs HOT 6
- ''Node not found'' issue HOT 1
- Support for GFA graph format?
- Empty output files HOT 1
- not an issue: small suggestion for recycler.py
- No output produced HOT 3
- Using contigs or scaffolds instead of the assembly graph. HOT 5
- Visualizing the predicted plasmids HOT 1
- AttributeError: Digraph object HOT 1
- Samtools sort changed HOT 1
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