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taxonomy improvement about hecatomb HOT 4 OPEN

shandley avatar shandley commented on July 3, 2024
taxonomy improvement

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Comments (4)

beardymcjohnface avatar beardymcjohnface commented on July 3, 2024

It's a tab-separated file so spaces shouldn't be a problem. How were you planning on parsing the files?

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mihinduk avatar mihinduk commented on July 3, 2024

I was trying to make a helper script to pull reads from a family of interest, so a shell script but could do it differently.

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beardymcjohnface avatar beardymcjohnface commented on July 3, 2024

If you're using awk, you'll just need to pass -F '\t' to change the field separator to tabs instead of whitespace.

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mihinduk avatar mihinduk commented on July 3, 2024

Hi Mike,
Uploading 2021_05_18_Viral_Baltimore_full_classification_table_ICTV2020.txt…

I just created an updated taxonomy database with Baltimore classification, which I am having trouble uploading here. This is the latest ICTV release. I will email it to you and Rob.

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