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shane's Projects

adam icon adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

avocado icon avocado

A Variant Caller, Distributed. Apache 2 licensed.

aws-audit icon aws-audit

aws consolidated billing audit/reporting tool

bdg-formats icon bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

bdg-utils icon bdg-utils

General (non-omics) code used across BDG products. Apache 2 licensed.

clipper icon clipper

A low-latency prediction-serving system

curriculum-guide icon curriculum-guide

Jupyter Book guide providing information about the Berkeley-managed Jupyterhubs and for creating/maintaining the data science curriculum.

datahub icon datahub

JupyterHubs for use by Berkeley enrolled students

ds-modules icon ds-modules

The official website for all of the modules developed by the Data Science Education Program.

emacs.d icon emacs.d

An Emacs configuration bundle with batteries included

folly icon folly

An open-source C++ library developed and used at Facebook.

ground icon ground

An open-source, vendor-neutral data context service.

hartsfield icon hartsfield

UI component for retrieving DataHub archived files.

hubploy icon hubploy

Toolkit to deploy many z2jh based JupyterHubs

keystone icon keystone

Simplifying robust end-to-end machine learning on Apache Spark.

mango icon mango

A scalable genome browser. Apache 2 licensed.

nbgitpuller icon nbgitpuller

Jupyter server extension to sync a git repository one-way to a local path

python-popularity-contest icon python-popularity-contest

Collect pre-aggregated, anonymized data on which installed libraries are being actively used by your users.

ray icon ray

An experimental distributed execution engine

repo2docker icon repo2docker

Turn repositories into Jupyter-enabled Docker images

rise-infra icon rise-infra

tools and scripts used to help manage RISELab infrastructure

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