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34-r-hierarchical-edge-bundling

andysbrainbook

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

atom-portable

Portable version of the Atom text editor

awesome-phd

All the resources I wish I knew when starting my PhD. This repository is aimed to be a living, constantly developing resource where everybody can contribute with new resources!

bids-starter-kit

Collection of tutorials, wikis, and templates to get you started with creating BIDS compliant datasets

bidsconvertr

brainconn

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

carpentries-incubator.org

cc-linear-mixed-models

Introduction to linear mixed models

circlize

Circular visualization in R

combatharmonization

Harmonization of multi-site imaging data with ComBat

course-materials-2022

Materials for the 2022 NeuroDataScience Course (McGill QLSC612)

dicomsort

DICOM sorting utility

edgebundler

Circle plot with bundled edges

ggsegpaper

gpls

a home for generalized partial least squares

gtsummary

Presentation-Ready Data Summary and Analytic Result Tables

imagevis3d

An out-of-core volumetric rendering application.

longcombat

R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data

matdrab2matfab

MATLAB and data science course, taking you from MATDRAB to MATFAB

mne-python

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

mnitemplate

MNI152 Template

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

neuroharmonize

Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Neuroimage by Pomponio et al. (2019).

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

plotly.py

The interactive graphing library for Python :sparkles: This project now includes Plotly Express!

pls

The pls R package

pls_connectome

Script for resting-state correlation analysis using Partial Least Squares

pyls

A Python implementation of Partial Least Squares (PLS) decomposition

pysustain

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.