Zhikai's Projects
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
local data repository
Official home of genome aligner based upon notion of Cactus graphs
Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
吴恩达老师的机器学习课程个人笔记
tutorials made for biologists to learn deep learning
深度学习500问,以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述,以帮助自己及有需要的读者。 全书分为18个章节,50余万字。由于水平有限,书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作,联系[email protected] 版权所有,违权必究 Tan 2018.06
A list of deep learning implementations in biology
Deep learning for plant phenotyping.
demos
Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.
find conserved non-coding sequences (CNS)
Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
Python scripts to find enrichment of GO terms
Genome-Phenome Wide Association Study
KaKs calculation per gene in multiple grass species
this repository accompanies the book "Grokking Deep Learning"
A gene (feature) selection toolset for gene expression matrix (GEM) data.
This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
Brief Introduction to Hyperspectral Image Analysis - Jupyter Notebook