Comments (3)
MRCmashroom
commented on September 16, 2024
hi YI Are you salving this problam?
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bhagya-ct
commented on September 16, 2024
Hello,
ran into the same problem, any solution?
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burnsro
commented on September 16, 2024
It isn't finding 23 "chromosomes"/clusters of contigs, in your HiC data which is the default setting in the ini file. If you have an idea of the chromosome number you expect, change that from the default number of 23 in the ini file
from lachesis.
Related Issues (20)
- Bareword found where operator expected at PreprocessSAMs.pl HOT 1
- error
- error: Assertion `c1.pos == c2.mpos' failed HOT 4
- Segmentation fault (core dumped) using reference HOT 2
- How to get chromosome bins HOT 6
- bam/sam.h HOT 7
- Error in grid.newpage() : could not open file 'out/HiC_heatmap.jpg' HOT 1
- errors about SAMStepper.cc and SAMStepper.h in sam.h
- checking for library containing deflate... no HOT 1
- samtools-0.1.18 boost_1_52_0 HOT 1
- configuration ERROR with samtools HOT 3
- cluster number is not equal with what I know
- significant clusters but no contigs oriented
- Error for ordering step
- Error in force(filename) : object 'jpeg.file' not found
- void LoadDeNovoCLMsFromSAM
- Lachesis: GenomeLinkMatrix.cc:1133: void GenomeLinkMatrix::ValidateClusters(const TrueMapping*, bool) const: Assertion `( same_cluster ? N_links_same_cluster : N_links_diff_cluster )
- samtools error HOT 1
- compile fail int64_t declaration without type. HOT 1
- checking for sam_open in -lbam... no
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