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Luke Sheneman's Projects

clearcut icon clearcut

This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm.

cuda icon cuda

Some CUDA basics for the Tech Talk series on accelerated computing

deep_lipid icon deep_lipid

Machine learning for semantic segmentation of lipid droplets within quantitative phase images (QPI) of yeast cells.

evalyn icon evalyn

EVALYN - A evolutionary computation approach to evolving high-quality guide trees and multiple sequence alignments.

facegan icon facegan

A simple GAN for generating human faces (or whatever)

finetune icon finetune

Repository for use with the library workshop on fine tuning LLMs

nanodetector icon nanodetector

A repository for all code and documents for NanoDetector, a device and AI model for species detection and classification.

segmentation icon segmentation

Some code for the semantic segmentation Data Hub workshop

shakegpt icon shakegpt

A system for learning how to read and emit Shakespeare using character-level tokens and a transformer model

tidydata icon tidydata

Assignment #1 from the Getting and Cleaning Data Course

tigervid icon tigervid

Scans video looking for frames which include animals, extracts video clips and a final report

unet icon unet

unet for image segmentation

vit icon vit

Vision Transformer Tech Talk

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