shenlab Goto Github PK

a-risk

F-risk, plausibility of risk genes of autism

alphacluster

quantify 3D physical or functional clustering of missense variants

biocluster

Tutorial on building a computing cluster for bioinformatics

breast_cancer_panel

Breast Cancer Study

cancer

canoes

cnv-espresso

A tool designed for confirming copy number variants from exome sequencing predictions in silico

episcore

exac_browser

Browser for ExAC consortium data

exome-vc-pipeline-v3

This is essentially a variation of V2, but in this case the pipeline is desgined to work on CentOS systems with out a scheduler capable of arrays and holds as per qsub.

genetics

gmvp

hapmut

hotspot

igv-classifier

lollipop

longreads

HapMut: Leveraging haplotype information in long reads for genotype and variant calling

misfit

Estimation of selection coefficient of missense variants using human population genomes and machine learning

missense

MVP (Qi et al 2021) source code

mosaicism

network

noncoding

Predict site-specific RNA binding protein - mRNA binding and functional impact of noncoding variants based on RBP binding and population genomes.

opera

Prototyping for summer '10 project.

parabl

Parametric Bayesian Likelihood

pathways

Pathway enrichment analysis of de novo or rare variants.

pipeline

premode

PreMode predicts mode-of-action of missense variants by deep graph representation learning of protein sequence and structural context

repertoire

Analytical tools for TCR sequencing data

rescve

Representation of missense variants for predicting modes of action

resources

ShenLab Repository for Papers and Other Resources