Shicheng Guo's Projects
Practical, reusable scripts for bioinformatics
BioPharma @ Computational Biology
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
Biostar Q&A
A program that scrapes news and price data for biotech stocks seeking FDA approval, built using Python and AutoHotkey
In-house computational biology workflows at Columbia Neurology
A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
Course Website for UC Davis BIS180L
specificity of all primer pairs
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
bisulfite reads mapping and genotyping package
Methods to uniquely determine the causal direction between two variables
BLAST-based validation of metagenomic sequence assignments
Web site for BMI 881 course on "Biomedical data science scholarly literature" from Fall, 2019
BMI 882 (Biomedical data science scholarly literature 2) from Spring, 2022
Automatically exported from code.google.com/p/bmiq
Interactive Data Visualization in the browser, from Python
Authoring Books and Technical Documents with R Markdown
A minimal example of using bookdown to write a book for Chapman & Hall/CRC
Template for R bookdown books
BRIE: Bayesian Regression for Isoform Estimate
Automatically exported from code.google.com/p/bsmap
Alignment of bisulfite sequence reads and tabulation of read-level methylation measurements
A versatile aligning pipeline for bisulfite sequencing data
fast and accurate alignment of BS-Seq reads
A tool for bigWig files.