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2d_gaussian_fit

Python code for 2D gaussian fitting, modified from the scipy cookbook.

2dgaussian

2d Gaussian fitting routine.

3d-fourier-ptychography-on-led-array-microscope

abtem

ab initio Transmission Electron Microscopy

advanced-medical-image-processing

A package for all projects of Medical Image processing at Vanderbilt (papers are in google drive)

aipy

Astronomical Interferometry in PYthon (AIPY)

airlab

Image registration laboratory for 2D and 3D image data

bcs

Bayesian Compressive Sensing and Multi-task Compressive Sensing

compressed_sensing

Image compression using compressed sensing.

cremi_electronmicroscopy_registration

Re-implement MICCAI19 Fast and Accurate Electron Microscopy Image Registration with 3D Convolution by Shenglong Zhou, Zhiwei Xiong, Chang Chen, Xuejin Chen, Dong Liu, Yueyi Zhang, Zheng-Jun Zha, and Feng Wu

cremi_python

Python scripts to read and write the CREMI hdf5 file format.

dft-exercises

DENSITY FUNCTIONAL THEORY EXERCISES

exit-wave-reconstruction

Simple Python-based exit wave reconstruction of focal series

fftw3

DO NOT CHECK OUT THESE FILES FROM GITHUB UNLESS YOU KNOW WHAT YOU ARE DOING. (See below.)

gaussfitter

Gaussfitter! Fitting 2D gaussians. Used to be on agpy

gerchberg-saxton-gs-algorithm

GS算法得到图像相位

holoaverage

Reconstruction and averaging of off-axis electron holograms as obtained by transmission electron microscopes.

image-registration

A MATLAB library/toolbox providing access to image registration suitable for use with medical images.

image-registration-1

An FFT-Based Technique for Translation, Rotation, and Scale-Invariant Image Registration

image_registration

基于opencv的图像识别基础库

imreg_dft

Image registration using discrete Fourier transform.

lammps_tools

Some scripting tools used for lammps input or output

machine_learning_algorithms

mc_simulation_morse_potential

This program uses Monte Carlo simulated annealing for optimization. We use the Morse Potential to compute the energy for an arbitrary number of atoms. We then use a Monte Carlo simulation to identify the lowest energy configuration of the atoms.

mdhw2

Draw picture!

minimize_cg

Conjugate gradients minimization

mrm-2014-phaseunwrapping

Robust Phase Unwrapping for MR Temperature Imaging Using a Magnitude-Sorted List, Multi-Clustering Algorithm

mutual-information

mutual-information for image registration temp1

non-blind-and-blind-deconvolution-under-poisson-noise

Non-blind and Blind Deconvolution under Poisson noise via Fractional-order Total Variation

non-convex

Self-contained implementation of non-convex optimization algorithms in python. Steepest Descent, Conjugate Gradient, Newton's Method, Quasi-newton (BFGS), l-BFGS