shishenyxx Goto Github PK
Name: Xiaoxu Yang
Type: User
Company: University of Utah
Bio: Researcher in Bioinformatics and Human Genetics interested in somatic and germline mosaicism.
Twitter: shishenyxx
Name: Xiaoxu Yang
Type: User
Company: University of Utah
Bio: Researcher in Bioinformatics and Human Genetics interested in somatic and germline mosaicism.
Twitter: shishenyxx
This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.
DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.
Documentation archive for GATK tools and workflows
This repository contains codes and pipelines, as well as data used in the analysis of human inhibitory and excitatory neuronal clonal dynamics and lineage relationships, with cell-type-specific mosaic variant barcoding analysis (cMVBA).
Malformations of cortical development (MCD) are neurological conditions displaying focal disruption of cortical architecture and disrupted cellular organization that occurs during embryogenesis. This repository contains the pipelines for data processing, codes for data analysis and plotting for the large-scale MCD data analysis.
MosaicBase is a comprehensive knowledgebase for postzygotic mosaic variants from noncancer disease-related and healthy human individuals
A mosaic detecting software based on phasing and random forest
A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.
Scripts for PASM, TAS/TASeq, and MPAS. We provided perl+R versions, python versions, and an extended snakemake version with all additional annotations. The scripts are useful for the calculation of variant allelic fractions for the validation and quantification of mosaic mutations.
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Collections of library structure and sequence of popular single cell genomic methods
This repository collects pipelines, codes, and some intermediate results for the study of mosaic SNV/Indels for sperm, blood, and other samples of a control cohort.
This repository collects pipelines, codes, and some intermediate results for the study of mosaic SNV/Indels for sperm, blood, saliva samples of a transmission genomic study.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.