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algotrade

algorithmic trading for quantitative strategies

atacproc

ATAC-seq processing pipeline

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

atacseq-1

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

atlas-components

Front end components of Expression Atlas and Single Cell Expression Atlas

atlas-data-import

atlas-web-core

Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

atlas-web-single-cell

Single Cell Expression Atlas web application

awesome-nextflow

A curated list of nextflow based pipelines

azul

Metadata indexer and query service used for HCA and CGP

batchjobs

BatchJobs: Batch computing with R

bioinformatics_notes

Bioinformatics and genomics resources

bios524_biostatistical_computing_r

"Biostatistical Computing with R" course material

biotools

A list of useful bioinformatics resources

brain_genomic_data

Brain-related -omics data

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

chip-seq_notes

Notes on ChIP-seq and other-seq-related tools

codealpaca

data-browser

data-explorer

data-portal

db-scxa

An AtlasProd module for loading scxa-analytics data to postgres.

deep-learning-with-r-notebooks

R notebooks for the code samples of the book "Deep Learning with R"

discourse

A platform for community discussion. Free, open, simple.

docker-galaxyp

:whale: Galaxy Docker repository with tools for proteomics (GalaxyP flavour)

egovframe-firstbook

fastbook

The fastai book, published as Jupyter Notebooks

fastchat

An open platform for training, serving, and evaluating large languages. Release repo for Vicuna and FastChat-T5.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

finviz

Unofficial API for finviz.com