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allensdk

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cc.github.io

cuda-connected-component-labelling

Parallel GPU Implementation of Connected Component Labelling (CCL). Connected-component labeling is used in computer vision to detect connected regions in binary digital images

dali

A library containing both highly optimized building blocks and an execution engine for data pre-processing in deep learning applications

dncnn

Beyond a Gaussian Denoiser: Residual Learning of Deep CNN for Image Denoising (TIP, 2017)

gamma-spot-removal-gpu

Gamma spots removal for Neutron radiography and tomography images using 'find and replace' strategy, this is a discriminative method, better than unique threshold substitution

gpu-camera-sample

Realtime GPU processing software (Windows, Linux, ARM) for camera applications. Glass-to-Glass time measurements.

gpu_medfilter

Median filter implementation on GPUs and multicores

imagefiltering_cuda

Image Filtering using CUDA

imagingsuite

Sources for imaging related tools

librealsense

Intel® RealSense™ SDK

mccode

mcstasscript

McStas API for creating and running McStas instruments from python scripting

median-filtering

Median Filtering Algorithm for removing Salt-Pepper Noise using CUDA (GPU) and OpenMP (Parallelized CPU)

median-filtering-gpu

High Performance Median Filtering Algorithm Based on NVIDIA GPU Computing

mediandenoise

Convolutional Neural Network with Median Layers for Denoising Salt-and-Pepper Contaminations

mmcoreanddevices

The c++ code at the core of the Micro-Manager project.

models

Models and examples built with TensorFlow

neurofinder

benchmarking challenge for finding neurons in imaging data

niftynet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

openbcsim

Open-source B-spline based implementation of the COLE ultrasound simulation algorithm.

patrecon

Patient-specific reconstruction of volumetric computed tomography images from few-view projections via deep learning

pyd-grid-reconstruction

CUDA code for grid reconstruction preprocessing wrapped as python module

pyfpm

Python Implementation of Fourier Ptychography Algorithm

pyyaml

Canonical source repository for PyYAML

stneuronet

Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," (IN PRESS) Proceedings of the National Academy of Sciences (PNAS), 2019.

stp-gui

SYRMEP Tomo Project (.NET Graphical User Interface for STP-Core)

supra

SUPRA: Software Defined Ultrasound Processing for Real-Time Applications - An Open Source 2D and 3D Pipeline from Beamforming to B-Mode

tensorboard

TensorFlow's Visualization Toolkit