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Shyam Gopalakrishnan's Projects

adna2019 icon adna2019

Exercises and slides for F stats and admixture graphs

bio-playground icon bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

cfw icon cfw

R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.

dame icon dame

DAMe: A Toolkit for the Initial Filtering Steps on Complex Datasets of PCR replicates from Pooled Double-tagged Amplicons for DNA Metabarcoding Analyses

dnamark icon dnamark

Code for website deployment for DNAMark

elephants icon elephants

Gene flow in the mammoth-asian elephant clade

jellybelly icon jellybelly

Toolset for vectorizing sequence data via spaced kmers

lions icon lions

Analysis of lion sequences for Ross' and Lis' project

migration icon migration

Project to estimate migration using an amalgamation of Jody Hey's and Li-Durbin method.

popgen19 icon popgen19

Lecture and exercise for GWAS workshop - Sydney 2019

pretty-dropdowns icon pretty-dropdowns

A simple, lightweight jQuery plugin to create stylized drop-down menus.

pymigration icon pymigration

Python implementation of the migration estimate project

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