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Hi there šŸ‘‹

My name is Sidhant Puntambekar. I am currently a bioinformatics analyst at Bionano Genomics in San Diego, California. During Spring 2023, I completed my undergraduate Computer Science degree with minors in Computational Biology and Molecular, Cellular, and Developmental Biology at the University of Colorado Boulder. My personal research interests lie at the intersection of utilizing computational methods to streamline biological data analysis. During summer 2022, I interned at Exact Sciences in Boston helping to streamline and develop their multiple cancer early detection (MCED) program as a computational biology and data science intern. Previously, I worked as a research intern at Harvard Medical School in the computational genomics lab of Dr. Shamil Sunyaev. Further in the past, I was also a bioinformatics undergraduate researcher at the RNA Bioscience Initiative Informatics Fellows Group under Dr. Jay Hesselberth at the University of Colorado Anschutz Medical School. Other programming interests of mine include object oriented programming, robotics, and full stack development. I was also a part of the HackCU (University of Colorado Boulder Hackathon) Software and Technology Team, serving as its director.

Where you can find me

Personal Tid Bits

  • šŸ”­ Iā€™m currently working on: Creating novel detection methods, algorithms, and validations for copy number variation detection in cytogenetics data through optical genome mapping and next generation sequencing.
  • šŸŒ± Iā€™m currently learning about: Machine Learning, Bioinformatics and Genomics, Cytogenetics, Perl software development
  • āš” Languages: Python, Java, C++, C, Full Stack (HTML, CSS, JavaScript/Typescript), R, Matlab, Scala, Perl
  • āš” Fun fact: I am a second degree black belt in Tae Kwon Do and have been training since I was seven years old.

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Sidhant Puntambekar's Projects

chess-app icon chess-app

A full stack application to play chess or chess960 as a single player (against a chess engine) or against another human opponent. WIP

ciphers icon ciphers

A repository to keep track of various ciphers used to encrypt and decrypt messages.

clustifyr icon clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

clustifyr-web-app icon clustifyr-web-app

An R Shiny app to help with scRNA-seq benchmarking and analysis with clustifyr

coin-abstraction icon coin-abstraction

Some random Java projects with classes and objects. IB Computer Science

csci-1300 icon csci-1300

A public repository to store assignments from CSCI 1300 offered by the University of Colorado Boulder

csci2897 icon csci2897

Calculating Biological Quantities - Fall 2021

d2d icon d2d

A D language graphics library built on DerelictSDL2.

discord-forecast-bot icon discord-forecast-bot

A work in progress bot that will aim to deliver up to date forecasts for weather in Boulder, CO

eval-comm-detections-hsdn icon eval-comm-detections-hsdn

A project to use various network community detection methods on the Human-Symptom Disease Network as created by Zhou et al. in 2014

fairview-code-kata-snek icon fairview-code-kata-snek

A backend for a multiplayer game of snake for Fairview Code Club's Code Kata on October 22, 2018 and October 29, 2018.

genmutation icon genmutation

A project to quantify the mutational constraint spectrum in human genomes. Data courtesy of open source genome aggregation database (gnomAD). Harvard DBMI SIBMI 2021 Project

hurricane-forecast-data icon hurricane-forecast-data

MATLAB code I wrote to analyze HURDAT2 hurricane data sets at my internship (National Center for Atmospheric Research)

isometricity icon isometricity

A project to test out isometric display for rectangular grids of tiles and learn java swing graphics

java-image-manipulation icon java-image-manipulation

A program which allows users the ability to manipulate .jpeg images utilizing a variety of filters. An exploration in Polymorphism.

movie-options icon movie-options

A program to display relevant details about any given movie. Motivated primarily for figuring out where a movie is available to watch.

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