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binf

A Python library for Bayesian inference. Easily stitch together your posterior from components and sample from it using Gibbs sampling and Hamiltonian Monte Carlo (HMC)!

covid19_logreg

ensemble_hic

Code for the article "Bayesian inference of chromatin structure ensembles from population-averaged contact data" (PNAS, 2020)

ensemble_hic-tfp

TensorFlow Probability implementation of the model in Carstens et al., PNAS (2020)

fix-python

A simple CLI tool to allow you to use Python "normally" in NixOS

install-nix-action

Installs Nix on GitHub Actions for the supported platforms: Linux and macOS.

kelloggs

Serial cereals

locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

nixpkgs

Nix Packages collection

pandemic-sim

A toy infectious disease outbreak simulation

pipestat

Pipeline results reporting package

probability

Probabilistic reasoning and statistical analysis in TensorFlow

probnum

Probabilistic Numerics in Python.

remote_spark_minimal

rexfw

A Python / MPI implementation of Replica Exchange (aka Parallel Tempering) which lets you run hundreds of replicas on a computing cluster.

simeoncarstens.github.io

Personal blog & website