Comments (1)
I have drafted a short write up for our Brainahack effort for the Brainhack Proceeding submission.
The aim is to have a 2-page, self content report on what we have done during the Brainhack.
It's clearly over 2-page but we have done a lot. I think it's justified...
The proceeding is on my repo: https://github.com/htwangtw/2021_08_Wang_load-confounds
For a rendered version please see here: http://wanghaoting.com/2021_08_Wang_load-confounds/
This proceeding covers the issues from this list
I would like to invite you all to add your names to the current draft through PR to the repo above, and submit any suggestions about the current draft. Of course if you don't want to be included, that's not a problem.
Please add your name (L68), affiliation (L44) and contribution (L93) etc to the report.md
Here are some that I would like to have some help on:
@smeisler - please have a look at the strategies part
@FrancoisPgm - I have a very brief description on the refactoring and please elaborate if need be
@m-w-w - please have a look at the description about the great demo you wrote
@danjgale and @harveyaa - I have included the work on nii-masker please see if you want this to be included - anything is welcomed
@pbellec - Is the result section too long?
I didn't check if there's more specific rules about the repo name etc. so I just put down the time the repo was created.
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Related Issues (20)
- enable to work when json is missing
- require nifti file as input and validate extension. HOT 3
- add sources of funding HOT 1
- generate `sample_mask` HOT 3
- document ICA denoising HOT 2
- code refactoring HOT 1
- document COMPCOR strategies
- Allow cifti and gifti as input file HOT 2
- Replacing current strategies with a smaller subset HOT 8
- compatibility issue with older tsv confound files. HOT 3
- issues in README HOT 2
- move from numpy array of confounds to pandas df HOT 2
- Add a warning about migration to nilearn
- how to check the number of scrubbed volumes? HOT 1
- Saving the img back to nii.gz after load confounds level HOT 3
- Importing Params
- create a PR to brainspace with the new nilearn interface HOT 1
- ICA Aroma strategy HOT 1
- Can't load any strategy HOT 1
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