Comments (2)
Hi Parul,
Unfortunately adding genomes to a preexisting run is not currently possible (maybe in the future). I am glad that you have a run with only a small number of genomes so that rerunning it isn't too problematic. If you need to find points of comparison between runs you could just use the locus tags of a single (or set) of genomes. The clustering is not deterministic between runs but should be broadly comparable.
All the best,
Sion
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Thanks for getting back to me Dr Bayliss. Really appreciate your response.
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Related Issues (20)
- mafft alignment number of threads HOT 1
- gaps in core_alignment.fasta HOT 1
- Output Files HOT 3
- Confused with terminology/output HOT 1
- extract_feature_sequences.pl failed HOT 2
- error observed during "aligning all feature sequences" HOT 2
- Missing genome in output HOT 12
- Output gene sequences to run gene alignment separately HOT 4
- PIRATE_plots.pdf created by plot_summary.R HOT 1
- Error after MCL clustering step HOT 5
- How do you tell which gene families are single-copy or multi-copy? HOT 2
- Feature request: Option to include original IDs and annotations in fasta headers for align_features_sequences script HOT 2
- Average_dose =1 is appropriate to determine whether a gene family is a single copy? HOT 1
- - ERROR: link_clusters.pl failed. HOT 1
- Undefined subroutine &main::translate called HOT 2
- Error when running PIRATE MCL process
- For some single loci, a gene family but for others not. HOT 1
- problem in installation HOT 9
- Bump version in new release HOT 4
- Missing output files and coregenom files HOT 3
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