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Stephanie Spielman's Projects

alignment_filtering icon alignment_filtering

Code and data for "Limited Utility of Residue Masking for Positive-Selection Inference," by SJS, ETD, COW.

bdib2018_python icon bdib2018_python

Materials for "Introduction to Python", offered through UT Austin's Big Data in Biology Summer School 2018

bio5312_fall2017 icon bio5312_fall2017

Course materials for Biostastistics (BIO5312) at Temple University, Fall 2017

ccbb_bigdata2015_python icon ccbb_bigdata2015_python

UT Austin Center for Computational Biology Big Data in Biology Summer School: Introduction to Python

colorblindr icon colorblindr

An R package to simulate colorblindness on R figures.

covid19-review icon covid19-review

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

cowplot icon cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

dnds_1rate_2rate icon dnds_1rate_2rate

Repository for manuscript "A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation" by SJS, SW, COW.

dragon icon dragon

Deep time Redox Analysis of the Geobiology Ontology Network

evolforces icon evolforces

Simulate population genetics simulations for the classroom

grabbag icon grabbag

Various scripts I have written that seem useful

hyphy icon hyphy

HyPhy: Hypothesis testing using Phylogenies

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