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bioconda-recipes

Conda recipes for the bioconda channel.

camikraken

A Dockerfile and wrappers for the Kraken metagenomic classifier

camisim

CAMISIM: Simulating metagenomes and microbial communities

clipper

A tool to identify CLIP-seq peaks

configs

Config files used to define parameters specific to compute environments at different Institutions

epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

fred2

Python-based framework for computational immunomics

green-algorithms-tool

handle_refseq_data

Get sequence metadata for RefSeq release catalogue using Entrez, filter for top 3 assemblies for each taxa and download FASTAs

knime_seqan_workflows

KNIME example workflows for NGS data analysis with SeqAn apps.

mag

Assembly and binning of metagenomes

mason2

metapep

From metagenomes to epitopes and beyond

mhcnuggets

Public facing repository for the MHCnuggets method

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nextflow

A DSL for data-driven computational pipelines

nf-co2footprint

pipeline-docs

Docs for QBiC pipelines

plugins

Nextflow plugins index repository

pureclip

Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data

pureclip_data

refseq_rollback

A collection of scripts to recreate historical RefSeq versions

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

seqan

SeqAn's official repository.

seqan-mirror

Git mirror for the SeqAn project.

sim_iclip

Simulation framework for iCLIP/eCLIP-seq data

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools

Python package with helper tools for the nf-core community.

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

website

Code and files for the main nf-core website.