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rosettafold

This package contains deep learning models and related scripts for RoseTTAFold

rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

scct

New method to dectect recent positive selection by conditional coalescent tree (contact: wilyric[AT]gmail.com or minxian[AT]broadinstitute.org)

scripts

Scripts for analysis used during the course

selscan

Haplotype based scans for selection

smcpp

SMC++ infers population history from whole-genome sequence data.

soypopgeneticspipeline

speciationgenomics.github.io

Repository for speciation genomics website

ssmpg2017

Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)

strelka

Strelka2 germline and somatic small variant caller

structural-analysis

This repository contain a program to perform a analysis of statically indeterminate structures.

toolset

MMTSB Tool Set

transformercpi2.0

Sequence-to-drug concept adds a perspective on drug design. It can serve as an alternative method to SBDD, particularly for proteins that do not yet have high-quality 3D structures available.

tutorials

Tutorials on evolutionary genomics

unet

unet for image segmentation

unetplusplus

Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018

unix_exercises

Files for Unix exercises

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

vcf2sfs

R functions for calculating site frequency spectrum (SFS) or joint SFS of more than one population from a VCF file.

yak

Yet another k-mer analyzer