[MacOS] Slicer does not start after installing SlicerJupyter

[che85]

[MacOS] Slicer does not start after installing SlicerJupyter

[domillima]

Also experiencing this. Have a Apple M3 chip macbook pro. Uninstalled and reinstalled slicer with the same error.

[Khoa-NT]

I have the same problem on my M2 Macbook Air

[che85]

@lassoan I compiled locally, packaged and installed via ExtensionManager. When starting Slicer, getting the following:

(base) herzc@K4YF7L70NQ Slicer-build % ./Slicer
2024-04-05 13:58:10.454 Slicer[43613:5435359] WARNING: Secure coding is automatically enabled for restorable state! However, not on all supported macOS versions of this application. Opt-in to secure coding explicitly by implementing NSApplicationDelegate.applicationSupportsSecureRestorableState:.
  Error(s):
    Cannot load library /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib: (dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib, 0x0085): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <959C0021-FD22-35BA-A01D-81572C83F204> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/libqSlicerJupyterKernelModule.dylib
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/QtCore.framework/Versions/5/Frameworks/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file))
dlopen(/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so, 0x0002): Library not loaded: @rpath/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
  Referenced from: <294383B9-4128-3CFB-AF29-EA20B3B7AC4C> /Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/Extensions-32793/SlicerJupyter/lib/Slicer-5.7/qt-loadable-modules/vtkSlicerJupyterKernelModuleLogicPython.so
  Reason: tried: '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/qRestAPI-build/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/Slicer-build/bin/Slicer.app/Contents/MacOS/../Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/CTK-build/CMakeExternals/Install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/teem-build/bin/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/Qt/5.15.2/clang_64/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Users/herzc/D/S4D/LibArchive-install/lib/Frameworks/QtWidgets.framework/Versions/5/QtWidgets' (no such file)

[che85]

Compiling with ZeroMQ v4.3.4 failed with:

make[5]: *** [CMakeFiles/objects.dir/src/ws_engine.cpp.o] Error 1
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/ctx.cpp:60:10: fatal error: 'gnutls/gnutls.h' file not found
#include <gnutls/gnutls.h>
         ^~~~~~~~~~~~~~~~~
1 error generated.
make[5]: *** [CMakeFiles/objects.dir/src/ctx.cpp.o] Error 1
In file included from /Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/curve_client.cpp:36:
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/session_base.hpp:116:10: warning: 'process_conn_failed' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    void process_conn_failed ();
         ^
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/object.hpp:149:18: note: overridden virtual function is here
    virtual void process_conn_failed ();
                 ^
In file included from /Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/curve_mechanism_base.cpp:35:
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/session_base.hpp:116:10: warning: 'process_conn_failed' overrides a member function but is not marked 'override' [-Winconsistent-missing-override]
    void process_conn_failed ();
         ^
/Users/herzc/sources/cpp/SlicerJupyter/build/ZeroMQ/src/object.hpp:149:18: note: overridden virtual function is here
    virtual void process_conn_failed ();

I updated to v.4.3.5 and it compiled.

[che85]

When running SlicerWithSlicerJupyter directly from the inner-build directory, everything seems to be working and SlicerJupyter can be used.

[lassoan]

@che85 Thanks for the information, I've updated the build scripts to use ZeroMQ 4.3.5 - 724809a

When running SlicerWithSlicerJupyter directly from the inner-build directory, everything seems to be working and SlicerJupyter can be used.

Thanks for the information, this is good to know.

After installing SlicerJupyter from the ExtensionManager and restarting Slicer, Slicer crashes at bootup time

Does this still occur with the latest Slicer Preview Release?

[che85]

@lassoan I just checked with the most recent preview and it is still crashing.