Comments (2)
This appears to be an issue with the PyPi version of Phylotoast- from what I can tell (With my lack of knowledge of Python) the util.py script has no definition for the 'rstyle' attribute. Removing the PyPi version and installing the Github repo version of Phylotoast appears to fix the issue.
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Thank you for the report! Your followup message is correct. That method was renamed at some point and the PCoA_bubble script was unfortunately not updated before the 1.3 release.
The 1.3 release is now sufficiently old that I would definitely recommend installing from the git repo as you did. In addition, as you noticed, the documentation has kept current with the code in the repository, even though the version number on the documentation still reads 1.3.0.
Technically the official documentation for the last release is under the 'stable' docs: phylotoast.readthedocs.io/en/stable/
The 'latest' docs which is the default when going to docs.phylotoast.org reflects the latest built documentation from the GitHub repository.
Since you pointed this out (and because we're close to an official 1.4 release), I've updated the version number in the setup.py and in the docs to 1.4.0rc1 to make sure people are current.
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Related Issues (17)
- Removing relative_abundance() from otu_calc.py HOT 2
- Editing raw_abundance() in biom_calc.py HOT 2
- Changes to biom_summary() function HOT 2
- Modify parse_map_file() HOT 1
- iTol.py: No warning given if mapping file sample IDs are not in the BIOM table HOT 2
- phylotoast is not in PyPI HOT 5
- PCoA.py and PCoA_bubble.py do not support the new UniFrac file format in QIIME 1.9 HOT 1
- Update otu_to_tax_name.py HOT 1
- Replace brewer2mpl HOT 1
- Update PCoA_bubble HOT 1
- Add error handling to otu_to_tax_name.py. HOT 1
- LDA/PCoA update HOT 2
- Alpha diversity HOT 1
- Integrating network analysis into PhyloToAST HOT 1
- Switch to Python3 HOT 1
- How to remove/move legend in PCoA plots HOT 1
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