Comments (3)
Setting BAM sorting threads separately from threadN doesn't fix this, unfortunately.
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Catching this error and asking user to lower the thread count might be solution enough for now.
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Addressed with workaround in #84
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Related Issues (20)
- Worflow processing time HOT 9
- Missing input files for rule fastp_fq HOT 1
- Still running after five days of computation HOT 4
- (1) "Error waiting for container: invalid character 'u' looking for beginning of value" (2) "Could not execute because the application was not found or a compatible .NET SDK is not installed." HOT 61
- Same issue as #199 with updated mzLib HOT 8
- gatk MarkDuplicates Exception in thread "main" java.lang.OutOfMemoryError: GC overhead limit exceeded HOT 11
- Spritz crashing after command line execution (Ubuntu). Step 10. HOT 14
- Option to generate separate databases for each input
- Simplifying version checks HOT 1
- Integration into snakepipes HOT 1
- Slight discrepancy in number of targets and decoys in `withdecoys.fasta` after mzLib decoy generation
- FragPipe-ready fasta headers and redundancy reduction HOT 5
- Conda/dotnet not properly detecting openssl within minimamba docker container; probable conda issue HOT 3
- Using Arabidopsis sequences for tests instead of yeast HOT 1
- Update uniprot URLs to rest.uniprot from legacy.uniprot
- Error response from daemon: No such container: spritz-615926720 HOT 6
- Error in rule reorder_genome_fasta HOT 3
- Error in rule make_gene_quant_dataframe_ref HOT 14
- Enable running Spritz with singularity
- Error in rule setup_transfer_mods HOT 7
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