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almrun

绿色实用,功能强大的快速启动软件,Merry和ALTRun的结合体

bac-genomics-scripts

Collection of scripts for bacterial genomics

be-a-professional-programmer

成为专业程序员路上用到的各种优秀资料、神器及框架

beginning-perl-for-bioinformatics

Beginning Perl for Bioinformatics · 生物信息学 Perl 语言入门（中文版）

biocode

Bioinformatics code libraries and scripts

biocode-1

biocode

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bioinformatics123

bioperl-live

Core BioPerl 1.x code

build-web-application-with-golang

A golang ebook intro how to build a web with golang

c3upo_website

canu

A single molecule sequence assembler for genomes large and small.

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cfvisual

A Visualized Software for Comparetive Analysis of Gene Family

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

circlize

Circular visualization in R

circos

Mirror of cricos. "Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. "

circtest

CircRNA testing and ploting R package

circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in single command line driven software.

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cnci

Coding-Non-Coding Index (CNCI)

copytranslator

Foreign language reading and translation assistant based on copy and translate.

cyntenator

Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes.

dcc

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

deseq2

RNA-seq;stringtie;hista2

deseq2-1

Guide for the Differential Expression Analysis of RNAseq data using DESeq2

diamond

Accelerated BLAST compatible local sequence aligner.

dna-seq-analysis

my notes on whole exome and whole genome sequencing analysis

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

ergatis

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.