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alicevision

Photogrammetric Computer Vision Framework

ansible-autofs

Autofs role for ansible use

ansible-kerberos

Kerberos ansible role for installation and configuration

ansible-sssd

bpp-core

Bio++ Core Library

buildah

A tool that facilitates building OCI images

chrysalis

Chrysalis codebase

community.general

Ansible Community General Collection

diamond

Accelerated BLAST compatible local sequence aligner.

diffie-hellman-primes

A collection of Diffie-Hellman primes generated by random people, no idea if they are legitimate or not.

eagle

gcta

GCTA software

hapcut2

software tools for haplotype assembly from sequence data

iastateboxbackup

Simple client for backing up a directory to Box

lustre_bulk_migrate

Utility to parallelize lustre migrations a bit

masurca

mem_eater

A simple program to eat all the memory on a system.

montage

Image Mosaics for Astronomers

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

repeatmodeler

De-Novo Repeat Discovery Tool

s3uploader

Basic S3 uploader using boto3

satsuma2

FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing

servo

The Servo Browser Engine

snap

Gene prediction software

snphylo

A pipeline to generate a phylogenetic tree from huge SNP data

soapdenovo-trans

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

soapdenovo2

Next generation sequencing reads de novo assembler.

tophat

Spliced read mapper for RNA-Seq

trellis-sandbox