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casmonitorqt5

PySide2 touchscreen-based GUI and python functions for sample processing and fluid control system for biomedical research

clam

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

concl

[ECCV2022] ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Image

deeplabv3plus-pytorch-wsi

DeepLabv3 and DeepLabv3+ with pretrained weights for Pascal VOC & Cityscapes (Modified for Whole Slide Images)

gastric-cps-pdl1-onest

Multi-institutional inter-rater reliability study of 14 pathologists scoring PDL1 IHC by CPS in 108 cases of gastric cancer

her2-ihc-onest-multi-institutional-irr

Multi-institutional evaluation and inter-rater reliability of pathologist scoring HER2 immunohistochemistry

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

ihc-virtual-stain-attngan

mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

mmselfsup

OpenMMLab Self-Supervised Learning Toolbox and Benchmark

nv_stylegan2-ada-pytorch-wsi

StyleGAN2-ADA - Official PyTorch implementation

onest_modified

Observers Needed to Evaluate Subjective Tests in R with extra functions to help save data and customize plots

pdffigures2

Given a scholarly PDF, extract figures, tables, captions, and section titles.

qupath

QuPath - Bioimage analysis & digital pathology

qupath-extension-debug-script-editor-intellij

Peter Haub QuPath script debugger extension compatible with IntelliJ

remix

[MICCAI2022] This repository holds the Pytorch implementation for the ReMix augmentation described in the paper "ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification"

seg-gini

SEGmentation using Graphs with Inexact aNd Incomplete labels

semantic-segmentation-suite

Semantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!

semanticgan_wsi

Official repo for SemanticGAN https://nv-tlabs.github.io/semanticGAN/

staintransfer_cyclegan_pytorch

Image-to-Image Translation in PyTorch

stylegan2-pytorch-wsi

Implementation of Analyzing and Improving the Image Quality of StyleGAN (StyleGAN 2) in PyTorch

transmil

TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification

valis

Virtual Alignment of pathoLogy Image Series