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charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

checkqc

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

cookiecutter

Template for your own top-end Nextflow pipeline, customised using Cookiecutter

coursera-angularjs

Coursera AngularJS

coursera-webdev

Coursera test repository

create-react-app

Set up a modern web app by running one command.

formalisms

genologics

Python interface to the GenoLogics LIMS server via its REST API.

genomics-status

Tornado server for tracking samples at NGI Stockholm

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

lims2db

lims_dashboard

mdx_outline

Python-Markdown extension to wrap the document logical sections (as implied by h1-h6 headings)

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_ngi

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

my-react-weather-app

:sun_behind_rain_cloud: React weather app

my_astro_page

⭐ Personal page

my_first_gatsby_site

my_page

🦄

my_vue_page

nf-co.re

Code and files for the main nf-core website.

nf-core-tools

Python package with helper tools for the nf-core community.

ngi_dashboards

SciLifeLab NGI Dashboard Code

ngi_pipeline

Code driving the production pipeline at SciLifeLab

ngi_reports

Code to generate reports for use by the NGI in SciLifeLab

ngi_visualizations

Next-Gen Sequencing Visualisation Scripts.

ngisweden.se

Wordpress theme and plugins for ngisweden.se

orderportal

A portal for orders (a.k.a. requests, project applications) to a facility from its users.

piper

A genomics pipeline build on top of the GATK Queue framework

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control