Comments (1)
gmillerscripps
commented on August 15, 2024
Hi @Aminach1 are you confident that all of your cellTypes are present in the flowJo workspace?
You could start with:
gatingResult <- GetFlowJoLabels(fcs.dir, wspFile,
cellTypes = NULL,
getData = TRUE, sample_names_from="sampleNode")
and then look at: print(levels(gatingResult[["manual"]])) to determine if your cellTypes are present.
Hope this helps. If this works, I am curious to know if the results match the gated numbers that you see in your flowJo workspace.
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