solida-core Goto Github PK
Name: solida-core
Type: Organization
Bio: Robust, and ready-to-use collection of extensively validated bioinformatic pipelines
Location: CRS4 - CENTER FOR ADVANCED STUDIES, RESEARCH AND DEVELOPMENT IN SARDINIA
solida-core's Projects
.github
dica
dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
diva
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
diva.wgs
docs
solida-core documentation:
mirna
miRNA analysis pipeline
musta
MUSTA: a modular pipeline to detect, classify and interpret mutations in cancer
niasmic
Non Invasive Analysis of Somatic Mutations in Cancer
qcrs4
A pipeline for QC
ride
solida
SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.
solida-core
solida-gui
Container Docker application that facilitate the solida usage, via a friendly GUI
sride
Snakemake enabled pipeline for smallRNA-Seq identification
test-data-dna
A repository with test data for DNA analysis pipelines
test-data-rna
test-data-somatic
toolkit
DNA Reference Creator: this pipeline is aimed at downloading and building indexes and accessory files for reference genomes
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