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bayesiannetworkregression.jl

bioklustering

BioKlustering: a web app for semi-supervised learning of maximally unbalanced genomic data

bryophytes-introgression

Collaboration with Juan Carlos Villareal Aguilar, Gordon Burleigh

car-lasso

Conditional Auto-Regressive LASSO

colonization-squid

Studying the colonization factors of bacteria in squid (in collaboration with Mark Mandel)

data-art-exhibition

Materials for the website for the Data as Art Exhibition series.

dna-nn

Machine-learning methods (in particular neural networks) on DNA sequence input data for microbial datasets (in collaboration with Tim Read and Sam Brown)

dna-nn-simulations

dna-nn-theory

Here, we investigate the robustness, generalization potential and prediction accuracy of widely used convolutional neural network and natural language processing models with a variety of heterogeneous genomic datasets.

dummy-repo

Dummy repo to practice git/github in the lab

el-zoominario

El Zoominario: seminar series to increase visibility of Latinx in STEM

forensic-stat-database

graphical-abstracts

Source(?) of graphical abstracts of publications

high-dim-stat-microbiome

highdimmixedmodels.jl

Julia package for fitting regularized linear mixed-effect models on high-dimensional omics data.

lab-dynamics

Useful documents on guidelines, advice, resources for the lab

latinx-stat-database

latinx-uwmadison

learning-data-science

Learning materials for Data Science within biological applications such as WI Fast Plants: https://fastplants.org/

minaa

MiNAA aligns a pair of networks based their topologies and biologies.

minaa-webapp

The MiNAA Web App is a wrapper around MiNAA built with R Shiny.

mycovirus-ml

Machine-learning tools for mycovirus data

phylo-webapp

phyloclustering.jl

phylodiamond.jl

Method to estimate phylogenetic networks from algebraic invariants

potato-lankau

Potato dataset: statistical and machine learning analyses in collaboration with Rick Lankau

potato-seed-cert

Data analysis and visualization for the WI potato seed certification database

read-clustering

sample-size-shinyapp

R Shinyapp to calculate sample size for a given power

simulation-suite

Myriad of scripts to simulate data in phylogenetics