sophieclayton Goto Github PK

2015-01-15-uw

Software carpentry workshop at UW, January 2015

2015-06-25-uw

2018-data-workshops

2018 OOI Data Workshops

argo_processing

Code library to support processing and quality control of BGC Argo floats.

bokeh

Interactive Data Visualization in the browser, from Python

chla_sop

Chlorophyll a Standard Operating Procedure (SOP)

cytdiv

cytoDiv is a R package that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880

dash-by-plotly

Interactive data analytics

datacarpentry

Data Carpentry workshop materials

flowphyto

flowPhyto is a package for the R statistical programming language that uses automated computational methods (flowClust and flowMeans) to cluster phytoplankton populations, perform aggregate statistics and create maps of phytoplankton distribution from georeferenced flow cytometry data. For more details, see Ribalet, F., Schruth, D., and Armbrust, E.V. 2011. flowPhyto: enabling automated analysis of microsccopic algae from continuous flow cytometric data. Bioinformatics 27:732-733

funwithdata

Playing with data and visualizations

geopandas

Python tools for geographic data

km1304_lengthscales

kuroshio-biogeog

kuroshio_chapter

kuroshio_nutricline

Scripts used to calculate nutricline depth from BGC-Argo floats in the Western Pacific

kuroshio_productivity

lab-website

lanyon

A content-first, sliding sidebar theme for Jekyll.

markdown-resume

The simplest possible resume work flow from markdown source.

model_comparison

mv1405

myria-python

Python utilities for exercising Myria's REST API

ncp_project

nycc-time-series

This repository contains scripts used for processing and analysing data collected as part of ODU's time series study in the Lafayette River.

oeas805_envdatasci

Course materials for OEAS805

old_blog

Sophie Clayton's research blog

ooi_bgc

ostreo_analysis

patchiness_code