Comments (2)
Hmm, interesting. I'm not worried about the sourmash_lib/
name, as I expect this to be mostly used from the command line. Making the sourmash
command an entry point is a good idea; I'll see if it's easy to do while still keeping the setup good for the way I develop (which is to do a 'python setup.py build_ext -i' in the repo directory). Thx!
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done! as of 2d0f95c
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Related Issues (20)
- add some rust developer docs!
- detecting and removing microbial contamination from human WGS - info, tutorial, etc.
- `sketch` ... `--name` is not documented in CLI help HOT 1
- Application of `f_unique_to_query` and `threshold_bp` HOT 5
- Implement a SOCKS interface plugin
- ANI calculation HOT 2
- Custom alphabet or moltype? HOT 1
- classify plant reads in metagenomes
- deprecate `--name` on `sig` subcommands
- `sourmash_plugin_dehash` - reverse-hash sourmash signatures to retrieve the ACGT k-mers for further investigation or downstream analysis
- `sourmash_plugin_betterplot` - improved plotting/viz and cluster examination
- `sourmash_plugin_pangenomics` - tools for sourmash-based pangenome analyses
- Depleting kmers shared with another reference HOT 7
- update docs around `gather` against reference genomes with abundances
- standard plugin utils library - good idea or bad idea? HOT 1
- GTDB release 9 - RS220 - databases HOT 3
- `sig filter` consumes a lot of memory.
- How does Sourmash cope with genome redundancy in GenBank reference genomes HOT 3
- update API documentation around saving/loading sketches for v5
- Sourmash panicked when it "Couldn't find End Of Central Directory Record" HOT 2
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