Comments (5)
This is intentional! It can be helpful to have the tests around to debug installations.
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We are starting to have a sizable collection of tests, it is probably better to collect them in a tests/
directory now.
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pip install khmer
followed by py.test --pyargs khmer
runs tests. Doesn't this mean we can have the best of both worlds? Ship tests and keep them in a subdirectory for tab-completion heaven?
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Related Issues (20)
- Application of `f_unique_to_query` and `threshold_bp` HOT 5
- Implement a SOCKS interface plugin
- ANI calculation HOT 2
- Custom alphabet or moltype? HOT 1
- classify plant reads in metagenomes
- deprecate `--name` on `sig` subcommands
- `sourmash_plugin_dehash` - reverse-hash sourmash signatures to retrieve the ACGT k-mers for further investigation or downstream analysis
- `sourmash_plugin_betterplot` - improved plotting/viz and cluster examination
- `sourmash_plugin_pangenomics` - tools for sourmash-based pangenome analyses
- Depleting kmers shared with another reference HOT 8
- update docs around `gather` against reference genomes with abundances
- standard plugin utils library - good idea or bad idea? HOT 1
- GTDB release 9 - RS220 - databases HOT 3
- `sig filter` consumes a lot of memory.
- How does Sourmash cope with genome redundancy in GenBank reference genomes HOT 3
- update API documentation around saving/loading sketches for v5
- Sourmash panicked when it "Couldn't find End Of Central Directory Record" HOT 4
- `sourmash sig extract` will create empty zip file from directsketch databases HOT 12
- `sourmash_plugin_directsketch` - download and sketch data directly
- gather is calculating `remaining_bp` incorrectly HOT 2
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