Related Issues (20)
- `sourmash_plugin_dehash` - reverse-hash sourmash signatures to retrieve the ACGT k-mers for further investigation or downstream analysis
- `sourmash_plugin_betterplot` - improved plotting/viz and cluster examination
- `sourmash_plugin_pangenomics` - tools for sourmash-based pangenome analyses
- Depleting kmers shared with another reference HOT 8
- update docs around `gather` against reference genomes with abundances
- standard plugin utils library - good idea or bad idea? HOT 1
- GTDB release 9 - RS220 - databases HOT 3
- `sig filter` consumes a lot of memory.
- How does Sourmash cope with genome redundancy in GenBank reference genomes HOT 4
- update API documentation around saving/loading sketches for v5
- Sourmash panicked when it "Couldn't find End Of Central Directory Record" HOT 4
- `sourmash sig extract` will create empty zip file from directsketch databases HOT 12
- `sourmash_plugin_directsketch` - download and sketch data directly
- gather is calculating `remaining_bp` incorrectly HOT 2
- refactor `calculate_gather_stats` to avoid calculating intersections twice
- update docs with pretty pictures from `betterplot` plugin HOT 2
- enable protein sketches for pangenome hash correlations HOT 4
- sourmash release v4.8.9
- improve sourmash-rs core error reporting for bad/empty zip files
- use `SaveSignaturesToLocation` context manager properly in `sig` commands
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