Comments (4)
from sourmash.
OK. I won't propose to touch it if going to be removed. If it is going to stay I'd propose to:
- make the type a parameter when creating instances of class
SourmashSignature
- add a parameter to the command type (e.g.,
--signature-type
) to specify that type. The default would be"unspecified"
.
from sourmash.
from sourmash.
Removed in #335.
from sourmash.
Related Issues (20)
- A potential bug? `search` not reporting matches w/identical md5s HOT 1
- describe Poisson math underlying hash generation and matching
- provide complete documentation on `gather` and `prefetch` output columns HOT 1
- add explicit documentation for installing sourmash to the docs HOT 1
- Taxonomic labels for individual contigs in metagenomic assembly HOT 15
- less % coverage of metaG after adding more references to database HOT 2
- output reporting on `sourmash sketch dna --singleton ...` is borked HOT 1
- Sourmash failed to run with Python 3.7. HOT 6
- Extracting reads based on Taxonomy assignments in Sourmash, similar to Kraken HOT 1
- `sourmash gather` raises `AssertionError` on minimal test dataset HOT 4
- How does sourmash gather time scale with reads (and can this be reduced with multithreading)? HOT 3
- add 'exact' option for `sig extract`? HOT 1
- How to interpret the results from sourmash gather --picklist from prefetch? HOT 5
- adjust sourmash gather "overlap" documentation description
- documentation for `sourmash signature kmers` is incorrect about exiting with bad kmers HOT 1
- Q: how does memory usage of sourmash change with k-mer size?
- add FAQ to sidebar docs
- 'search_abund requires abundance' error when using an index HOT 1
- Developer documentation missing from the main ToC HOT 1
- Creating signatures from multiple .fna files HOT 2
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