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Scripts needed to process raw sequence data files
Code used to analyze the antibiotic resistance genotype-phenotype relationship in wastewater Pseudomonas isolates
Personal repo with a random collection of scripts
Simple box model to predict mixing in bottles
Scripts and pipeline associated with the shotgun metagenomic analysis of samples from 2017 in the Chesapeake Bay
Scripts associated with manuscript submitted to Environmental Microbiology
Scripts for running moving pictures tutorial on MARCC
Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses the information contained in the distribution of DNA sequences across samples along with sequence distances to cluster sequences accurately.
Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses the information contained in the distribution of DNA sequences across samples along with sequence similarity to cluster sequences more accurately than other methods that are currently available. Developed for Illumina next-generation sequencing libraries, but applicable to any sequencing platform with sufficient number of counts per sample to infer distribution patterns.
Scripts for processing epicPCR data
This is a test repository for the class to learn to use gits and github.
This is a repository for Methods in Microbial Community Analysis for pipeline development for the moving pictures analysis
Genome explicit biogeochemical model. Combination of models, such as Mystic (Preheim et al), GENOME (Coles et al) and gene-centric approached of Reed et al and Louca et al.
Metagenomics pipeline for Methods in Microbial Community Analysis FA23
Example scripts for Methods in Microbial Community Analysis- Fall 2023
Scripts to compare PacBio draft genomes of antibiotic and antiviral resistant mutant E coli strains
metagenomic binning, quantification, and analysis with metawrap
Standard protocol for lab and students running 16S rRNA analysis on MARCC.
Standard shotgun metagenomic assembly pipeline for the Preheim lab, designed for use on MARCC
a 16s pipeline
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.