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sparsepenn's Projects

boiarsky-etal-2022 icon boiarsky-etal-2022

Code to reproduce methods & results from Boiarsky et. al., Nature Communications 2022

book icon book

Deep Learning 101 with PaddlePaddle

bspl-fc icon bspl-fc

Balanced Self-Paced Learning with Feature Corruption

csmr icon csmr

Component Sparse Mixture Regression

dca icon dca

Deep count autoencoder for denoising scRNA-seq data

dgrns icon dgrns

A deep learning framework for gene regulatory network inference from single-cell transcriptomic data

drjcc icon drjcc

Clustering scRNA-seq by joint dimension reduction and clustering

drjnmf icon drjnmf

Clustering scRNA-seq by joint dimension reduction and clustering

episcanpy icon episcanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

flan icon flan

Code for paper FLAN: Domain Adaptation with Feature and Label AdversarialNetworks.

itclust icon itclust

Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis

mofa icon mofa

Multi-Omics Factor Analysis

multik icon multik

MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.

nimfa icon nimfa

nimfa - A Python Library for Nonnegative Matrix Factorization Techniques

nsf-paper icon nsf-paper

Nonnegative spatial factorization for multivariate count data

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