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10rulesbionets

2016

Materials prepared by the instructors of the #NGSchool2016

2017

Materials used during #NGSchool2017

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

appris

Annotating principal splice isoforms

atac-seq

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atacseqqc

ATAC-seq Quality Control

atactk

A toolkit for working with ATAC-seq data.

awesome-algorithms

A curated list of awesome places to learn and/or practice algorithms.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

azimuth

Python 3 version of https://github.com/MicrosoftResearch/Azimuth for use by Geneious Prime

bagel

BAGEL software

bfast

BFAST: the Blat-like Fast Accurate Search Tool

bioicons

A library of free open source icons for science illustrations in biology and chemistry

bioinf-python

Python for Bioinformatics

bioinf525

ATAC-seq lab for BIOINF525

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-training

Bioinformatics training resources

book

Compiled and pretty version of labs

books-zhongwen-

2021年最新总结，推荐工程师合适读本，计算机科学，软件技术，创业，**类，数学类，人物传记书籍

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

c1-cage-preview

Technology preview of the C1 CAGE protocol: processing and quality control.

cas-offinder

An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

cbw_pathways_bookdown

CBW Pathways workshop book

cdna_primer

Scripts for processing PacBio transcriptome (Iso-Seq) data

cgat

CGAT - Computational Genomics Analysis Tools

cld

A software for the multispecies design of CRISPR/Cas9 libraries