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Samuel Rusher's Projects

bioinformatics-pipeline icon bioinformatics-pipeline

A pipeline bash script used for the retrieval, assembly (alignment and scaffold assembly), gene annotation, and RNA seq analysis of B. Thuringiensis sequence reads

dna-palindrome-generator icon dna-palindrome-generator

This program is designed to convert a DNA string into a palindrome utilizing the fewest possible nucleotide insertions - all bases from the original sequence are preserved

fasta_parser icon fasta_parser

This program will import a fasta file, parse out the sequence ID with its associated DNA sequence, and allow the user to retrieve a DNA sequence by entering in the appropriate sequence ID

my-first-gui icon my-first-gui

A simple GUI I made in Java using the javax.swing library

protein-domain-locator icon protein-domain-locator

This program utilizes regex patterns to locate the Zinc Finger protein domain from a FASTA file. The output will produce every Accession ID, the associated protein sequence and the Zinc FInger domain underlined in each prtoein sequence.

tautyping-nf icon tautyping-nf

This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic

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