ss6025 Goto Github PK

barseq_qc_dm_ss

datasharing

The Leek group guide to data sharing

dinucleotide_forces

This repository contains the code for computing dinucleotide forces, both with and without codon constraints.

flow

flow_old

Scripts for processing flow cytometry and FACS data

forces

Force calculation for RNA transcripts

gi-of-kinases-in-quiescence

Contains code to re-run analyses, generating tables and making plots for Sun et al. 2019 paper

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

l1orf1p_adar1

Immunostimulatory SINE being regulated by L1 ORF1p and ADAR1

l1rt_adar1

pecaplus_cmd_line

Command-Line Interface for PECA+

perseus-pluginpeca

PECAplus plugin developed for Perseus

proteome_rim15_quiescence

repenrich2

RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

safepy

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

shinyapps

Deploy Shiny applications to ShinyApps

spacewalk

SpaceWalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.

statistical_machine_learning

This is the Github repo for the course Statistical Machine Learning offered at Columbia University. I set this up as my personal blog for future students instead of just some site for homework answers. Please feel free to email me if you have questions.