Comments (4)
lonsbio
commented on August 28, 2024
From [email protected] on 2012-06-22T19:53:50Z
Thanks for reporting this! I will get the fix into the next release.
Status: Accepted
Labels: -Priority-Medium Priority-High
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lonsbio
commented on August 28, 2024
From [email protected] on 2012-07-05T04:29:43Z
Seems like realpath is not installed by default on a lot of linux installs or OSX.
Can you comment on whether readlink is supported on Gentoo? This seems to be installe on CentOS, MacOSX and Cygwin,
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lonsbio
commented on August 28, 2024
From [email protected] on 2012-07-05T04:38:22Z
Checked in changes to fix, using readlink rather than realpath
Should appear in 0.9.5.2 or 0.9.6
Status: Started
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lonsbio
commented on August 28, 2024
From [email protected] on 2012-08-04T22:01:38Z
released 0.9.6_beta_1
Status: Fixed
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Related Issues (20)
- previous working version of bpipe script did not work in bpipe 0.9.9.8
- bpipe: line 762: 63827 Killed nohup bash -c "$LAUNCH_CMD" > /dev/null 2>&1 HOT 1
- transform incorrectly processes directory names instead of filenames HOT 4
- bpipe how to get the output path when the -d was defined
- Modify preamble text when using shebang HOT 4
- Install fails. HOT 2
- Conditional execution of steps
- Allow containers to have different paths to the external ones
- job failed due to global variable assignment HOT 2
- Regression with XMPP channel HOT 1
- Significant number of critical vulnerabilities reported in dependencies HOT 3
- Error when running on osx-arm64 HOT 2
- Problem with hostname resolution
- slurm scheduler not working with slurm-wlm-torque qstat HOT 5
- Installing error in Bpipe on M1 Mac HOT 2
- A fixed error reappeared HOT 2
- bpipe via Conda throws java.lang.NoClassDefFoundError
- Skip command start for "my command" due to probe mode HOT 1
- Activate conda environment and execute command
- Null PID reference HOT 2
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