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Why does edge (vertices are the most similar nodes of each other) have greater weight when compare with min_sim about finch-clustering HOT 1 CLOSED

ssarfraz avatar ssarfraz commented on June 28, 2024
Why does edge (vertices are the most similar nodes of each other) have greater weight when compare with min_sim

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ssarfraz avatar ssarfraz commented on June 28, 2024

@seanM29 the weights of edges would be greater when they are directed and form loops, its just an output of the way clustering equation is implemented, however important to know is that FICNH does not use any edge weights, they may as well be all set to 1's (I leave this out to save some compute.. as it doesn't matter we just use all connected components irrespective of their weights). The comparison of min_sim is only optional (see the updated read me), it helps early exit and may prove useful when your data is unbalanced. This however also can not be done when you are using approx NN (KD-tree) to find the 1st nbr, only would run when using exact distance to compute 1st nbrs.

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