ssarria Goto Github PK
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ssarria's Projects
assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
bin3c-1
Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
bio309_spring2017
Course Page for BIOF-309 FAES Spring 2017
centrifuge
Classifier for metagenomic sequences
git-github.com-kblin-ncbi-genome-download
https-github.com-marbl-metacarvel
kraken2
The second version of the Kraken taxonomic sequence classification system
megahit
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
metacarvel
MetaCarvel: A scaffolder for metagenomes
metagenomescope
Web visualization tool for (meta)genome assembly graphs
metamos
A metagenomic and isolate assembly and analysis pipeline built with AMOS
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
r_for_biologists
Scripts and data for Plotting in R for Biologists, a video course on YouTube
roary
Rapid large-scale prokaryote pan genome analysis
spacegraphcats
In space, no one can hear you miao. And graphs!
srst2
Short Read Sequence Typing for Bacterial Pathogens
trimmomatic
trimmomatic-1
Read trimming tool for Illumina NGS data.
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