Related Issues (20)
- create a docker for bifrost launcher HOT 1
- Fix setup to install indexes for DB and species install.
- Change it so components can be re-installed onto themselves (for development adjustments to config.yaml) as deleting from DB to update is less than ideal.
- Clean up setup folder. shouldnt be needed but currently dockerfiles in others are pulling common resources from it. Should move those into the components (or base)
- Columns can be added/hidden by the user
- Download finders result for selected samples as csv
- Add input species for components with a species requirement. This is so if the user changes the species the component still has info on which species it ran against
- Update bifrostlib for samplecomponents to reflect schema2.0 and beyond, right now its more hardcoded for snakemake purposes
- Update tests with new bifrostlib functionality
- Split tests into fast and slow (or unit/integration) so that the watchdog runs quick ones first and then bigger ones after for faster feedback loops
- Fix issue where a component requirement isn't working. Currently it's checking off it's own id and not that of the target.
- push newest bifrostlib to all components
- turn bifrost into bifrostlib submodule and reporter submodule so that bifrost is just the collection and documentation organization
- Create version tag for all components and check dockerhub (update github actions)that it reflects properly HOT 1
- Adjust sample_component path to include final path not just sample path
- Fix for bifrost_run_launcher test will affect other tests as calling run_program isn't neccesary or desired now
- Requirements not passed failing the component
- QC score HOT 4
- chewBBACA component for Bifrost HOT 4
- Documentation link at readme.md yields a 404
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from bifrost.