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attributedsbm

Fits an attributed stochastic block model for networks with multiple continuous attributes

attributepaperv1

comp790-166-comp-bio

Computational Biology- Spring 2021

cytodx

cytofkit

cytofkit: an integrated flow/mass cytometry data analysis pipeline

densvis

Density-preserving data visualization tools den-SNE and densMAP

diffcyt

R package for differential discovery analyses in high-dimensional cytometry data

fcs_tutorial

A tutorial for dealing with FCS files in both Python and R. Includes instruction for arcsinh transform, selecting relevant markers, etc.

graphtools

Tools for building and manipulating graphs in Python

kcbc

find super nodes with k cores

largevis

An implementation of the largeVis algorithm for visualizing large, high-dimensional datasets, for R

lathese

PhD thesis. very good memories.

metaboanalystr

R package for MetaboAnalyst

moab

Quantitative benchmarking algorithms for measuring the performance of dimensionality reduction methods on features across multiomics datasets.

multcomp

:exclamation: This is a read-only mirror of the CRAN R package repository. multcomp — Simultaneous Inference in General Parametric Models. Homepage: http://multcomp.R-forge.R-project.org The publishers web page is http://www.crcpress.com/product/isbn/9781584885740

ncdfflow

A package that provides ncdf based storage for flow cytometry data.

pediatric_hf

Example for using Vopo on a dataset with several stimulations etc.

perio_stacking

for stacking analysis of perio data

rclusterpp

Memory efficient clustering in R for large datasets

rphenograph

Rphenograph: R implementation of the PhenoGraph algorithm

rpython

:exclamation: This is a read-only mirror of the CRAN R package repository. rPython — Package Allowing R to Call Python. Homepage: http://rpython.r-forge.r-project.org/

smlsbm

Fitting the strata multilayer stochastic block model to a multilayer network.

spade

SPADE: Spanning Tree Progression of Density Normalized Events

stanleyn.github.io

Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

steroid_immune_data

supernode

Reduce the size of your network from N nodes to S super nodes

torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

trimap

TriMap: Dimensionality Reduction Using Triplet Constraints

vopo

Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mostly mass cytometry) data.