Comments (5)
None of the tables (feature_cvterm, blast_hit_data, analysis) provide a way to find when the last record was created. Also, the importers don't have any indication which organisms they affected so we can't use those hooks either. We might have to just generate an entire site fasta file once every 6 months or something like that. Would that work?
from automated_annotation.
the chado way to track this is to keep the date in the analysis.
from automated_annotation.
Right but unfortunately the analysis itself won't change per annotation run. It also won't have information on which organisms to generate data for and which to ignore. It gets even more complicated when importers clear all annotations related to an analysis before reimporting.
from automated_annotation.
Right but unfortunately the analysis itself won't change per annotation run.
why not? it should.
It also won't have information on which organisms to generate data for and which to ignore.
It will if you create new analyses...
from automated_annotation.
We are using 1 site-wide analysis for this (1 ips analysis, 1 blast trembl, etc). We then run blast/ips on a fasta file that has all organisms merged into one. (like we did before for ips)
from automated_annotation.
Related Issues (11)
- Send data to Staton server HOT 1
- Create a report page HOT 1
- Can we make the report pages faster?
- More info on the reports page? HOT 2
- multiple analyses vs recycling analysis over time
- I am not getting emails every month HOT 3
- Split file by number of organisms HOT 1
- Blast databases need to be limited HOT 2
- We are missing KEGG tests HOT 1
- Don't print empty residues
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from automated_annotation.