stevekm Goto Github PK

african-pca

annotate-peaks

Scripts for .bed file genomic region annotation with various tools

autoreportlite

Automatic analysis pipline & reporting template

badas_nextflow_tutorial

Nextflow tutorial for the BADAS series at NYU Center for Genomics and Systems Biology

bash_commands

Short bash scripts that I've written and / or found useful. Also check my gists; https://gist.github.com/stevekm

beagle

Voyager Backend

benchmark

Simple benchmark for computer performance

bioinformatics

Bioinformatics analysis scripts, workflows, general code examples

bobs-pipeline

Bob's Burgers Hamburger Making Nextflow Pipeline

bucket-master

scripts for working with AWS S3 buckets

bwa-bench

cnv-nf

conda-docker-multienv

A template for building a Docker container with multiple conda envs

conda-package-demo

Creating a conda env from a custom package using non-Python programs

conda-phoenix

how to set up Anaconda and Conda environments on NYULMC phoenix HPC cluster

conpair

Concordance and contamination estimator for tumor–normal pairs

contact-sheets

Guide for making contact sheets from film negatives

containers

Docker and Singularity containers for Bioinformatics programs

copy-cwl

demo CWL

cut

GNU cut implemented in Rust

cwl-demos

cwl-nf

Run Nextflow from within a CWL pipeline

dagobah-training

Training ground for aspiring Galaxy skywalkers

deeppath

Classification of Lung cancer slide images using deep-learning

deeppath-viewer

demultiplexing-stats

Demultiplexing stats report designed for NextSeq output

demux-nf

Nextflow pipeline for Illumina NGS demultiplexing

django-celery-example

This is a simple example about how to create a progress bar in Django with Celery.

django-gunicorn-nginx

Django app deployment with Gunicorn and nginx

dmca

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